IL_5HCP_012

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_012 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.0828

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5HCP|1|1A|U|316
5HCP|1|1A|A|317
5HCP|1|1A|G|318
*
5HCP|1|1A|C|366
5HCP|1|1A|G|367
5HCP|1|1A|A|368
5HCP|1|1A|A|369
5HCP|1|1A|A|370

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Y

50S ribosomal protein L24