IL_5HCP_228

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

5HCP|1|2A|G|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|G|1364
5HCP|1|2A|C|1365
5HCP|1|2A|A|1366
5HCP|1|2A|A|1367
5HCP|1|2A|U|1368
5HCP|1|2A|G|1369
*
5HCP|1|2A|C|1375
5HCP|1|2A|A|1376
5HCP|1|2A|G|1377
5HCP|1|2A|C|1378

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23