IL_5HCP_245

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5HCP|1|2A|G|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_245 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1182

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5HCP|1|2A|C|1732
5HCP|1|2A|G|1733
5HCP|1|2A|U|1734
5HCP|1|2A|A|1735
5HCP|1|2A|A|1736
5HCP|1|2A|C|1737
*
5HCP|1|2A|G|1742
5HCP|1|2A|G|1743
5HCP|1|2A|A|1744
5HCP|1|2A|G|1745
5HCP|1|2A|A|1746
5HCP|1|2A|A|1747
5HCP|1|2A|G|1748

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA