IL_5HCP_288

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GUG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCP_288 not in the Motif Atlas

Geometric match to IL_4J39_001

Geometric discrepancy: 0.238

The information below is about IL_4J39_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5HCP|1|2B|G|21
5HCP|1|2B|U|22
5HCP|1|2B|G|23
*
5HCP|1|2B|C|60
5HCP|1|2B|G|61
5HCP|1|2B|C|62

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2S

50S ribosomal protein L18