IL_5HCP_356

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGAAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

5HCP|1|1A|A|1091, 5HCP|1|1A|U|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|1A|C|1088
5HCP|1|1A|G|1089
5HCP|1|1A|A|1090
5HCP|1|1A|A|1091
5HCP|1|1A|G|1092
5HCP|1|1A|A|1093
5HCP|1|1A|C|1094
5HCP|1|1A|A|1095
5HCP|1|1A|G|1096
5HCP|1|1A|C|1097
5HCP|1|1A|C|1098
*
5HCP|1|1A|G|1151
5HCP|1|1A|G|1152
5HCP|1|1A|U|1153
5HCP|1|1A|C|1154
5HCP|1|1A|G|1155
5HCP|1|1A|A|1156
5HCP|1|1A|G|1157

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6