IL_5HCP_364

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GUG*CAACAAGC

Length

11 nucleotides

Bulged bases

5HCP|1|2A|C|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|G|1526
5HCP|1|2A|U|1527
5HCP|1|2A|G|1528
*
5HCP|1|2A|C|1551
5HCP|1|2A|A|1552
5HCP|1|2A|A|1553
5HCP|1|2A|C|1554
5HCP|1|2A|A|1555
5HCP|1|2A|A|1556
5HCP|1|2A|G|1557
5HCP|1|2A|C|1558

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains