IL_5HCP_367

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UGAUC*GGUUUG

Length

11 nucleotides

Bulged bases

5HCP|1|2A|U|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|U|2468
5HCP|1|2A|G|2469
5HCP|1|2A|A|2470
5HCP|1|2A|U|2471
5HCP|1|2A|C|2472
*
5HCP|1|2A|G|2500
5HCP|1|2A|G|2501
5HCP|1|2A|U|2502
5HCP|1|2A|U|2503
5HCP|1|2A|U|2504
5HCP|1|2A|G|2505

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2z

Metalnikowin-1