IL_5HCQ_066
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5HCQ|1|1A|G|1745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_066 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.0992
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5HCQ|1|1A|C|1732
5HCQ|1|1A|G|1733
5HCQ|1|1A|U|1734
5HCQ|1|1A|A|1735
5HCQ|1|1A|A|1736
5HCQ|1|1A|C|1737
*
5HCQ|1|1A|G|1742
5HCQ|1|1A|G|1743
5HCQ|1|1A|A|1744
5HCQ|1|1A|G|1745
5HCQ|1|1A|A|1746
5HCQ|1|1A|A|1747
5HCQ|1|1A|G|1748
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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