IL_5HCQ_115
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUG*CG
- Length
- 6 nucleotides
- Bulged bases
- 5HCQ|1|1a|G|65, 5HCQ|1|1a|U|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_115 not in the Motif Atlas
- Homologous match to IL_5J7L_005
- Geometric discrepancy: 0.1094
- The information below is about IL_5J7L_005
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
5HCQ|1|1a|C|64
5HCQ|1|1a|G|65
5HCQ|1|1a|U|66
5HCQ|1|1a|G|67
*
5HCQ|1|1a|C|97
5HCQ|1|1a|G|98
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
Coloring options: