3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
5HCQ|1|1a|G|904
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HCQ_148 not in the Motif Atlas
Homologous match to IL_4LFB_036
Geometric discrepancy: 0.0837
The information below is about IL_4LFB_036
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

5HCQ|1|1a|G|903
5HCQ|1|1a|G|904
5HCQ|1|1a|G|905
*
5HCQ|1|1a|U|1373
5HCQ|1|1a|U|1374

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1v
mRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5459 s
Application loaded.