IL_5HCQ_155

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5HCQ|1|1a|C|1037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_155 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1149

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5HCQ|1|1a|U|1035
5HCQ|1|1a|G|1036
5HCQ|1|1a|C|1037
5HCQ|1|1a|A|1038
5HCQ|1|1a|U|1039
*
5HCQ|1|1a|A|1186
5HCQ|1|1a|U|1187
5HCQ|1|1a|G|1188

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z