3D structure

PDB id
5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGGACA*UG
Length
8 nucleotides
Bulged bases
5HCQ|1|2A|C|300
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5HCQ_184 not in the Motif Atlas
Homologous match to IL_7RQB_010
Geometric discrepancy: 0.5182
The information below is about IL_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5HCQ|1|2A|C|296
5HCQ|1|2A|G|297
5HCQ|1|2A|G|298
5HCQ|1|2A|A|299
5HCQ|1|2A|C|300
5HCQ|1|2A|A|301
*
5HCQ|1|2A|U|385
5HCQ|1|2A|G|386

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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