IL_5HCQ_184
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGACA*UG
- Length
- 8 nucleotides
- Bulged bases
- 5HCQ|1|2A|C|300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_184 not in the Motif Atlas
- Homologous match to IL_7RQB_010
- Geometric discrepancy: 0.5182
- The information below is about IL_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCQ|1|2A|C|296
5HCQ|1|2A|G|297
5HCQ|1|2A|G|298
5HCQ|1|2A|A|299
5HCQ|1|2A|C|300
5HCQ|1|2A|A|301
*
5HCQ|1|2A|U|385
5HCQ|1|2A|G|386
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: