IL_5HCQ_213

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5HCQ|1|2A|U|1186, 5HCQ|1|2A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_213 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.0939

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5HCQ|1|2A|C|1063
5HCQ|1|2A|U|1064
5HCQ|1|2A|A|1065
5HCQ|1|2A|A|1066
5HCQ|1|2A|G|1067
5HCQ|1|2A|U|1068
5HCQ|1|2A|G|1069
*
5HCQ|1|2A|C|1184
5HCQ|1|2A|U|1185
5HCQ|1|2A|U|1186
5HCQ|1|2A|A|1187
5HCQ|1|2A|A|1188
5HCQ|1|2A|G|1189

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13