IL_5HCQ_303
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCQ_303 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1154
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.3
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
5HCQ|1|2a|G|405
5HCQ|1|2a|G|406
5HCQ|1|2a|A|407
5HCQ|1|2a|A|408
5HCQ|1|2a|G|409
5HCQ|1|2a|A|410
5HCQ|1|2a|A|411
5HCQ|1|2a|G|412
*
5HCQ|1|2a|U|423
5HCQ|1|2a|G|424
5HCQ|1|2a|U|425
5HCQ|1|2a|A|426
5HCQ|1|2a|A|427
5HCQ|1|2a|A|428
5HCQ|1|2a|C|429
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2d
- 30S ribosomal protein S4
Coloring options: