IL_5HCQ_352
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUAGGG*UACCAAAC
- Length
- 15 nucleotides
- Bulged bases
- 5HCQ|1|2A|A|941, 5HCQ|1|2A|A|944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCQ|1|2A|G|921
5HCQ|1|2A|C|922
5HCQ|1|2A|U|923
5HCQ|1|2A|A|924
5HCQ|1|2A|G|925
5HCQ|1|2A|G|926
5HCQ|1|2A|G|927
*
5HCQ|1|2A|U|940
5HCQ|1|2A|A|941
5HCQ|1|2A|C|942
5HCQ|1|2A|C|943
5HCQ|1|2A|A|944
5HCQ|1|2A|A|945
5HCQ|1|2A|A|946
5HCQ|1|2A|C|947
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2Z
- 50S ribosomal protein L25
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