IL_5HCQ_356

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

5HCQ|1|2A|G|2329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCQ_356 not in the Motif Atlas

Homologous match to IL_9DFE_088

Geometric discrepancy: 0.2581

The information below is about IL_9DFE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5HCQ|1|2A|C|2308
5HCQ|1|2A|A|2309
5HCQ|1|2A|G|2310
*
5HCQ|1|2A|C|2328
5HCQ|1|2A|G|2329
5HCQ|1|2A|G|2330
5HCQ|1|2A|A|2331
5HCQ|1|2A|G|2332

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18