IL_5HD1_208

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

5HD1|1|2A|A|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_208 not in the Motif Atlas

Homologous match to IL_7RQB_033

Geometric discrepancy: 0.2614

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5HD1|1|2A|G|926
5HD1|1|2A|G|927
*
5HD1|1|2A|U|940
5HD1|1|2A|A|941
5HD1|1|2A|C|942

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Z

50S ribosomal protein L25