IL_5HD1_227

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

5HD1|1|2A|G|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HD1|1|2A|G|1364
5HD1|1|2A|C|1365
5HD1|1|2A|A|1366
5HD1|1|2A|A|1367
5HD1|1|2A|U|1368
5HD1|1|2A|G|1369
*
5HD1|1|2A|C|1375
5HD1|1|2A|A|1376
5HD1|1|2A|G|1377
5HD1|1|2A|C|1378

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23