IL_5HD1_340
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HD1_340 not in the Motif Atlas
- Homologous match to IL_4LFB_050
- Geometric discrepancy: 0.1675
- The information below is about IL_4LFB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5HD1|1|2a|C|1141
5HD1|1|2a|U|1142
5HD1|1|2a|G|1143
5HD1|1|2a|C|1144
*
5HD1|1|2a|G|1157
5HD1|1|2a|A|1158
5HD1|1|2a|G|1159
5HD1|1|2a|G|1160
5HD1|1|2a|A|1161
5HD1|1|2a|A|1162
5HD1|1|2a|G|1163
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2b
- 30S ribosomal protein S2
- Chain 2i
- 30S ribosomal protein S9
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