IL_5HD1_357
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAACUCUG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HD1_357 not in the Motif Atlas
- Homologous match to IL_9DFE_066
- Geometric discrepancy: 0.0493
- The information below is about IL_9DFE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
5HD1|1|1A|G|1712
5HD1|1|1A|G|1713
5HD1|1|1A|A|1714
5HD1|1|1A|A|1715
5HD1|1|1A|C|1716
5HD1|1|1A|U|1717
5HD1|1|1A|C|1718
5HD1|1|1A|U|1719
5HD1|1|1A|G|1720
*
5HD1|1|1A|C|2011
5HD1|1|1A|U|2012
5HD1|1|1A|G|2013
5HD1|1|1A|U|2014
5HD1|1|1A|C|2015
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
Coloring options: