IL_5HD1_359

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACCCG*UGUGUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HD1_359 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.328

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5HD1|1|1a|G|179
5HD1|1|1a|A|180
5HD1|1|1a|C|181
5HD1|1|1a|C|182
5HD1|1|1a|C|183
5HD1|1|1a|G|184
*
5HD1|1|1a|U|195
5HD1|1|1a|G|196
5HD1|1|1a|U|197
5HD1|1|1a|G|198
5HD1|1|1a|U|199
5HD1|1|1a|C|200

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20