IL_5HKV_008

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0632

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5HKV|1|X|C|241
5HKV|1|X|U|242
5HKV|1|X|U|243
5HKV|1|X|A|244
5HKV|1|X|G|245
5HKV|1|X|U|246
5HKV|1|X|A|247
5HKV|1|X|G|248
*
5HKV|1|X|C|256
5HKV|1|X|G|257
5HKV|1|X|A|258
5HKV|1|X|A|259
5HKV|1|X|A|260
5HKV|1|X|C|261
5HKV|1|X|G|262

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15