IL_5HKV_026
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HKV_026 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0542
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HKV|1|X|G|901
5HKV|1|X|A|902
5HKV|1|X|G|903
5HKV|1|X|G|904
5HKV|1|X|U|905
5HKV|1|X|A|906
5HKV|1|X|G|907
*
5HKV|1|X|C|960
5HKV|1|X|G|961
5HKV|1|X|A|962
5HKV|1|X|A|963
5HKV|1|X|U|964
5HKV|1|X|G|965
5HKV|1|X|C|966
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: