IL_5HKV_033

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5HKV|1|X|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_033 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0566

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5HKV|1|X|U|1062
5HKV|1|X|U|1063
5HKV|1|X|A|1064
5HKV|1|X|A|1065
5HKV|1|X|G|1066
5HKV|1|X|U|1067
5HKV|1|X|G|1068
*
5HKV|1|X|C|1184
5HKV|1|X|U|1185
5HKV|1|X|A|1186
5HKV|1|X|A|1187
5HKV|1|X|A|1188

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13