IL_5HKV_040

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAU*GAC

Length

6 nucleotides

Bulged bases

5HKV|1|X|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_040 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.1113

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5HKV|1|X|G|1257
5HKV|1|X|A|1258
5HKV|1|X|U|1259
*
5HKV|1|X|G|1266
5HKV|1|X|A|1267
5HKV|1|X|C|1268

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21