IL_5HKV_041

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGAGUAG*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_041 not in the Motif Atlas

Homologous match to IL_4WF9_048

Geometric discrepancy: 0.055

The information below is about IL_4WF9_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5HKV|1|X|G|1300
5HKV|1|X|U|1301
5HKV|1|X|G|1302
5HKV|1|X|A|1303
5HKV|1|X|G|1304
5HKV|1|X|U|1305
5HKV|1|X|A|1306
5HKV|1|X|G|1307
*
5HKV|1|X|U|2038
5HKV|1|X|G|2039
5HKV|1|X|A|2040
5HKV|1|X|A|2041
5HKV|1|X|A|2042
5HKV|1|X|U|2043
5HKV|1|X|C|2044

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32