IL_5HKV_046

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AUAAUCGUAU*AUAGAAU

Length

17 nucleotides

Bulged bases

5HKV|1|X|U|1454

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|A|1447
5HKV|1|X|U|1448
5HKV|1|X|A|1449
5HKV|1|X|A|1450
5HKV|1|X|U|1451
5HKV|1|X|C|1452
5HKV|1|X|G|1453
5HKV|1|X|U|1454
5HKV|1|X|A|1459
5HKV|1|X|U|1460
*
5HKV|1|X|A|1628
5HKV|1|X|U|1629
5HKV|1|X|A|1630
5HKV|1|X|G|1631
5HKV|1|X|A|1632
5HKV|1|X|A|1635
5HKV|1|X|U|1636

Current chains

Chain X

23s ribosomal RNA

Nearby chains