Loop IL_5HKV

3D structure

PDB id: 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.66 Å

Loop

Sequence: GCGAAGCGUGCGAUUGGAUUGCACGUCUAAGC*GUGAUGGGGAGAAGAGAGUCGUU
Length: 55 nucleotides
Bulged bases: 5HKV|1|X|A|1497, 5HKV|1|X|U|1498, 5HKV|1|X|G|1569
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5HKV|1|X|G|1485
5HKV|1|X|C|1486
5HKV|1|X|G|1487
5HKV|1|X|A|1488
5HKV|1|X|A|1489
5HKV|1|X|G|1490
5HKV|1|X|C|1491
5HKV|1|X|G|1492
5HKV|1|X|U|1493
5HKV|1|X|G|1494
5HKV|1|X|C|1495
5HKV|1|X|G|1496
5HKV|1|X|A|1497
5HKV|1|X|U|1498
5HKV|1|X|U|1499
5HKV|1|X|G|1500
5HKV|1|X|G|1501
5HKV|1|X|A|1502
5HKV|1|X|U|1503
5HKV|1|X|U|1504
5HKV|1|X|G|1505
5HKV|1|X|C|1506
5HKV|1|X|A|1507
5HKV|1|X|C|1508
5HKV|1|X|G|1509
5HKV|1|X|U|1510
5HKV|1|X|C|1511
5HKV|1|X|U|1512
5HKV|1|X|A|1513
5HKV|1|X|A|1514
5HKV|1|X|G|1515
5HKV|1|X|C|1516
*
5HKV|1|X|G|1564
5HKV|1|X|U|1565
5HKV|1|X|G|1566
5HKV|1|X|A|1567
5HKV|1|X|U|1568
5HKV|1|X|G|1569
5HKV|1|X|G|1570
5HKV|1|X|G|1571
5HKV|1|X|G|1572
5HKV|1|X|A|1573
5HKV|1|X|G|1574
5HKV|1|X|A|1575
5HKV|1|X|A|1576
5HKV|1|X|G|1577
5HKV|1|X|A|1578
5HKV|1|X|G|1591
5HKV|1|X|A|1592
5HKV|1|X|G|1593
5HKV|1|X|U|1594
5HKV|1|X|C|1595
5HKV|1|X|G|1596
5HKV|1|X|U|1597
5HKV|1|X|U|1598

Current chains

Chain X: 23s ribosomal RNA

Nearby chains

Chain K: 50S ribosomal protein L17

IL_5HKV_050