IL_5HKV_059

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5HKV|1|X|U|1828, 5HKV|1|X|U|1843, 5HKV|1|X|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_059 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.0961

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5HKV|1|X|U|1825
5HKV|1|X|G|1826
5HKV|1|X|C|1827
5HKV|1|X|U|1828
5HKV|1|X|A|1829
5HKV|1|X|A|1830
5HKV|1|X|A|1831
*
5HKV|1|X|U|1840
5HKV|1|X|G|1841
5HKV|1|X|A|1842
5HKV|1|X|U|1843
5HKV|1|X|G|1844
5HKV|1|X|U|1845
5HKV|1|X|A|1846
5HKV|1|X|U|1847
5HKV|1|X|A|1848

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2