IL_5HKV_063

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_063 not in the Motif Atlas

Geometric match to IL_4WF9_073

Geometric discrepancy: 0.1063

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5HKV|1|X|U|1878
5HKV|1|X|U|1879
5HKV|1|X|A|1880
5HKV|1|X|A|1881
5HKV|1|X|G|1882
*
5HKV|1|X|C|1914
5HKV|1|X|G|1915
5HKV|1|X|A|1916
5HKV|1|X|A|1917
5HKV|1|X|G|1918

Current chains

Chain X

23s ribosomal RNA

Nearby chains