IL_5HKV_069

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5HKV|1|X|C|2082, 5HKV|1|X|U|2640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_069 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.0632

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

5HKV|1|X|A|2081
5HKV|1|X|C|2082
5HKV|1|X|G|2083
*
5HKV|1|X|C|2639
5HKV|1|X|U|2640
5HKV|1|X|A|2641
5HKV|1|X|U|2642

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32