IL_5HKV_081

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5HKV|1|X|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_081 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1176

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5HKV|1|X|A|2486
5HKV|1|X|U|2487
5HKV|1|X|C|2488
*
5HKV|1|X|G|2516
5HKV|1|X|G|2517
5HKV|1|X|U|2518
5HKV|1|X|U|2519
5HKV|1|X|U|2520

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16