IL_5HKV_085

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

5HKV|1|X|A|2599, 5HKV|1|X|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HKV_085 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.1108

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5HKV|1|X|C|2539
5HKV|1|X|A|2540
*
5HKV|1|X|U|2598
5HKV|1|X|A|2599
5HKV|1|X|C|2600
5HKV|1|X|G|2601

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13