IL_5HKV_099
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- AGGUCACA*UUAAGGU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HKV_099 not in the Motif Atlas
- Homologous match to IL_4WF9_113
- Geometric discrepancy: 0.1047
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19048.1
- Basepair signature
- cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5HKV|1|Y|A|20
5HKV|1|Y|G|21
5HKV|1|Y|G|22
5HKV|1|Y|U|23
5HKV|1|Y|C|24
5HKV|1|Y|A|25
5HKV|1|Y|C|26
5HKV|1|Y|A|27
*
5HKV|1|Y|U|53
5HKV|1|Y|U|54
5HKV|1|Y|A|55
5HKV|1|Y|A|56
5HKV|1|Y|G|57
5HKV|1|Y|G|58
5HKV|1|Y|U|59
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
Coloring options: