IL_5HKV_109
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- GUGACUAUAG*CGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCC
- Length
- 55 nucleotides
- Bulged bases
- 5HKV|1|Y|U|10, 5HKV|1|Y|U|12, 5HKV|1|Y|G|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HKV|1|Y|G|5
5HKV|1|Y|U|6
5HKV|1|Y|G|7
5HKV|1|Y|A|8
5HKV|1|Y|C|9
5HKV|1|Y|U|10
5HKV|1|Y|A|11
5HKV|1|Y|U|12
5HKV|1|Y|A|13
5HKV|1|Y|G|14
*
5HKV|1|Y|C|66
5HKV|1|Y|G|67
5HKV|1|Y|A|68
5HKV|1|Y|C|69
5HKV|1|Y|G|70
5HKV|1|Y|A|71
5HKV|1|Y|U|72
5HKV|1|Y|G|73
5HKV|1|Y|G|74
5HKV|1|Y|U|75
5HKV|1|Y|A|76
5HKV|1|Y|G|77
5HKV|1|Y|C|78
5HKV|1|Y|C|79
5HKV|1|Y|A|80
5HKV|1|Y|A|81
5HKV|1|Y|C|82
5HKV|1|Y|U|83
5HKV|1|Y|U|84
5HKV|1|Y|A|85
5HKV|1|Y|C|86
5HKV|1|Y|G|87
5HKV|1|Y|U|88
5HKV|1|Y|U|89
5HKV|1|Y|C|90
5HKV|1|Y|C|91
5HKV|1|Y|G|92
5HKV|1|Y|C|93
5HKV|1|Y|U|94
5HKV|1|Y|A|95
5HKV|1|Y|G|96
5HKV|1|Y|A|97
5HKV|1|Y|G|98
5HKV|1|Y|U|99
5HKV|1|Y|A|100
5HKV|1|Y|G|101
5HKV|1|Y|A|102
5HKV|1|Y|A|103
5HKV|1|Y|C|104
5HKV|1|Y|G|105
5HKV|1|Y|U|106
5HKV|1|Y|U|107
5HKV|1|Y|G|108
5HKV|1|Y|C|109
5HKV|1|Y|C|110
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: