IL_5HL7_044

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5HL7|1|X|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_044 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.067

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5HL7|1|X|G|1356
5HL7|1|X|G|1357
5HL7|1|X|A|1358
5HL7|1|X|A|1359
5HL7|1|X|G|1360
*
5HL7|1|X|C|1368
5HL7|1|X|G|1369
5HL7|1|X|C|1370

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22