IL_5HL7_061

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5HL7|1|X|U|1828, 5HL7|1|X|U|1843, 5HL7|1|X|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_061 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0777

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5HL7|1|X|U|1825
5HL7|1|X|G|1826
5HL7|1|X|C|1827
5HL7|1|X|U|1828
5HL7|1|X|A|1829
5HL7|1|X|A|1830
5HL7|1|X|A|1831
*
5HL7|1|X|U|1840
5HL7|1|X|G|1841
5HL7|1|X|A|1842
5HL7|1|X|U|1843
5HL7|1|X|G|1844
5HL7|1|X|U|1845
5HL7|1|X|A|1846
5HL7|1|X|U|1847
5HL7|1|X|A|1848

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2