IL_5HL7_092

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_092 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.0898

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5HL7|1|X|U|2679
5HL7|1|X|U|2680
5HL7|1|X|A|2681
5HL7|1|X|G|2682
5HL7|1|X|U|2683
5HL7|1|X|A|2684
5HL7|1|X|C|2685
*
5HL7|1|X|G|2690
5HL7|1|X|G|2691
5HL7|1|X|A|2692
5HL7|1|X|C|2693
5HL7|1|X|C|2694
5HL7|1|X|G|2695

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6