IL_5HL7_111

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUUAGGG*CCCAGAA

Length

14 nucleotides

Bulged bases

5HL7|1|X|A|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_111 not in the Motif Atlas

Homologous match to IL_4WF9_118

Geometric discrepancy: 0.2343

The information below is about IL_4WF9_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|U|1755
5HL7|1|X|U|1756
5HL7|1|X|U|1757
5HL7|1|X|A|1758
5HL7|1|X|G|1759
5HL7|1|X|G|1760
5HL7|1|X|G|1761
*
5HL7|1|X|C|1768
5HL7|1|X|C|1769
5HL7|1|X|C|1770
5HL7|1|X|A|1771
5HL7|1|X|G|1772
5HL7|1|X|A|1773
5HL7|1|X|A|1774

Current chains

Chain X

23S ribosomal RNA

Nearby chains