IL_5HL7_113
3D structure
- PDB id
- 5HL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- ACUAUAG*CGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUU
- Length
- 49 nucleotides
- Bulged bases
- 5HL7|1|Y|U|10, 5HL7|1|Y|U|12, 5HL7|1|Y|G|87, 5HL7|1|Y|G|105
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HL7|1|Y|A|8
5HL7|1|Y|C|9
5HL7|1|Y|U|10
5HL7|1|Y|A|11
5HL7|1|Y|U|12
5HL7|1|Y|A|13
5HL7|1|Y|G|14
*
5HL7|1|Y|C|66
5HL7|1|Y|G|67
5HL7|1|Y|A|68
5HL7|1|Y|C|69
5HL7|1|Y|G|70
5HL7|1|Y|A|71
5HL7|1|Y|U|72
5HL7|1|Y|G|73
5HL7|1|Y|G|74
5HL7|1|Y|U|75
5HL7|1|Y|A|76
5HL7|1|Y|G|77
5HL7|1|Y|C|78
5HL7|1|Y|C|79
5HL7|1|Y|A|80
5HL7|1|Y|A|81
5HL7|1|Y|C|82
5HL7|1|Y|U|83
5HL7|1|Y|U|84
5HL7|1|Y|A|85
5HL7|1|Y|C|86
5HL7|1|Y|G|87
5HL7|1|Y|U|88
5HL7|1|Y|U|89
5HL7|1|Y|C|90
5HL7|1|Y|C|91
5HL7|1|Y|G|92
5HL7|1|Y|C|93
5HL7|1|Y|U|94
5HL7|1|Y|A|95
5HL7|1|Y|G|96
5HL7|1|Y|A|97
5HL7|1|Y|G|98
5HL7|1|Y|U|99
5HL7|1|Y|A|100
5HL7|1|Y|G|101
5HL7|1|Y|A|102
5HL7|1|Y|A|103
5HL7|1|Y|C|104
5HL7|1|Y|G|105
5HL7|1|Y|U|106
5HL7|1|Y|U|107
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: