IL_5HL7_119

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HL7_119 not in the Motif Atlas

Homologous match to IL_4WF9_124

Geometric discrepancy: 0.3299

The information below is about IL_4WF9_124

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5HL7|1|X|A|2123
5HL7|1|X|U|2124
5HL7|1|X|U|2125
5HL7|1|X|C|2126
*
5HL7|1|X|G|2217
5HL7|1|X|G|2218
5HL7|1|X|C|2219
5HL7|1|X|U|2220

Current chains

Chain X

23S ribosomal RNA

Nearby chains