IL_5HP2_002
3D structure
- PDB id
- 5HP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AU basepair at reaction site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.98 Å
Loop
- Sequence
- GAC*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HP2_002 not in the Motif Atlas
- Geometric match to IL_5ED1_002
- Geometric discrepancy: 0.112
- The information below is about IL_5ED1_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
5HP2|1|B|G|13
5HP2|1|B|A|14
5HP2|1|B|C|15
*
5HP2|1|C|G|9
5HP2|1|C|A|10
5HP2|1|C|C|11
Current chains
- Chain B
- RNA (5'-R(*UP*UP*CP*CP*CP*CP*AP*CP*AP*UP*UP*(8AZ)P*GP*AP*CP*GP*UP*UP*CP*AP*GP*UP*C)-3')
- Chain C
- RNA (5'-R(*GP*AP*CP*UP*GP*AP*AP*CP*GP*AP*CP*UP*AP*AP*UP*GP*UP*GP*GP*GP*GP*AP*A)-3')
Nearby chains
- Chain A
- Double-stranded RNA-specific editase 1
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