3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
5I4L|1|1|A|3178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_122 not in the Motif Atlas
Homologous match to IL_5TBW_123
Geometric discrepancy: 0.061
The information below is about IL_5TBW_123
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

5I4L|1|1|G|3177
5I4L|1|1|A|3178
5I4L|1|1|U|3179
*
5I4L|1|1|A|3210
5I4L|1|1|C|3211

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L6
60S ribosomal protein L6-A
Chain M4
60S ribosomal protein L14-A
Chain M6
60S ribosomal protein L16-A
Chain N0
60S ribosomal protein L20-A
Chain O3
60S ribosomal protein L33-A

Coloring options:


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