IL_5I4L_174
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 5I4L|1|2|U|959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_174 not in the Motif Atlas
- Geometric match to IL_6CZR_128
- Geometric discrepancy: 0.2812
- The information below is about IL_6CZR_128
- Detailed Annotation
- Single bulged G, near cWW
- Broad Annotation
- Single bulged G, near cWW
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
5I4L|1|2|G|868
5I4L|1|2|A|869
5I4L|1|2|C|870
*
5I4L|1|2|G|957
5I4L|1|2|U|958
5I4L|1|2|U|959
5I4L|1|2|U|960
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain D7
- 40S ribosomal protein S27-A
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