3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAC*GUUU
Length
7 nucleotides
Bulged bases
5I4L|1|2|U|959
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_174 not in the Motif Atlas
Geometric match to IL_6CZR_128
Geometric discrepancy: 0.2812
The information below is about IL_6CZR_128
Detailed Annotation
Single bulged G, near cWW
Broad Annotation
Single bulged G, near cWW
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

5I4L|1|2|G|868
5I4L|1|2|A|869
5I4L|1|2|C|870
*
5I4L|1|2|G|957
5I4L|1|2|U|958
5I4L|1|2|U|959
5I4L|1|2|U|960

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C3
40S ribosomal protein S13
Chain D7
40S ribosomal protein S27-A

Coloring options:


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