IL_5I4L_178

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5I4L|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_178 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3359

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5I4L|1|2|U|893
5I4L|1|2|U|894
5I4L|1|2|G|895
5I4L|1|2|U|896
5I4L|1|2|C|897
5I4L|1|2|A|898
5I4L|1|2|G|899
*
5I4L|1|2|C|910
5I4L|1|2|U|911
5I4L|1|2|U|912
5I4L|1|2|G|913
5I4L|1|2|G|914
5I4L|1|2|A|915
5I4L|1|2|U|916
5I4L|1|2|U|917
5I4L|1|2|U|918
5I4L|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-B

Chain S1

40S ribosomal protein S1-A