IL_5I4L_190
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_190 not in the Motif Atlas
- Geometric match to IL_4V88_446
- Geometric discrepancy: 0.1127
- The information below is about IL_4V88_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5I4L|1|2|G|1213
5I4L|1|2|U|1214
5I4L|1|2|C|1215
*
5I4L|1|2|G|1448
5I4L|1|2|U|1449
5I4L|1|2|U|1450
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain C5
- 40S ribosomal protein S15
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
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