3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUCUAAC*GUAAUC
Length
13 nucleotides
Bulged bases
5I4L|1|2|A|1516, 5I4L|1|2|U|1517
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_205 not in the Motif Atlas
Homologous match to IL_4V88_460
Geometric discrepancy: 0.1224
The information below is about IL_4V88_460
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_77092.1
Basepair signature
cWW-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

5I4L|1|2|G|1488
5I4L|1|2|U|1489
5I4L|1|2|C|1490
5I4L|1|2|U|1491
5I4L|1|2|A|1492
5I4L|1|2|A|1493
5I4L|1|2|C|1494
*
5I4L|1|2|G|1513
5I4L|1|2|U|1514
5I4L|1|2|A|1515
5I4L|1|2|A|1516
5I4L|1|2|U|1517
5I4L|1|2|C|1518

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C9
40S ribosomal protein S19-A
Chain D0
40S ribosomal protein S20
Chain D9
40S ribosomal protein S29-A
Chain S3
40S ribosomal protein S3

Coloring options:


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