3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGAAAU*ACGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5I4L_244 not in the Motif Atlas
Geometric match to IL_5TBW_015
Geometric discrepancy: 0.0553
The information below is about IL_5TBW_015
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5I4L|1|5|G|404
5I4L|1|5|U|405
5I4L|1|5|G|406
5I4L|1|5|A|407
5I4L|1|5|A|408
5I4L|1|5|A|409
5I4L|1|5|U|410
*
5I4L|1|8|A|13
5I4L|1|8|C|14
5I4L|1|8|G|15
5I4L|1|8|G|16
5I4L|1|8|A|17
5I4L|1|8|U|18
5I4L|1|8|C|19

Current chains

Chain 5
25S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain m7
60S ribosomal protein L17-A
Chain o2
60S ribosomal protein L32

Coloring options:


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