IL_5I4L_258

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

5I4L|1|5|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5I4L_258 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.1187

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5I4L|1|5|A|828
5I4L|1|5|U|829
*
5I4L|1|5|A|895
5I4L|1|5|A|896
5I4L|1|5|U|897

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain o4

60S ribosomal protein L34-A

Chain q3

60S ribosomal protein L43-A