IL_5I4L_259
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GU*GGC
- Length
- 5 nucleotides
- Bulged bases
- 5I4L|1|5|G|860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5I4L_259 not in the Motif Atlas
- Homologous match to IL_8C3A_032
- Geometric discrepancy: 0.1157
- The information below is about IL_8C3A_032
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
5I4L|1|5|G|833
5I4L|1|5|U|834
*
5I4L|1|5|G|859
5I4L|1|5|G|860
5I4L|1|5|C|861
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain q3
- 60S ribosomal protein L43-A
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